NBI, 20 December 2005

Publications in Internationally Refereed Journals

by Kim Sneppen

Nuclear Physics/Statistical Physics of Mesoscopic Systems.

1) J.Bondorf, R.Donangelo, I.Mishustin, C.Pethick, H.Schulz, K.Sneppen: Nucl. Phys. A443 (1985) 321. ``Statistical multifragmentation of nuclei (Formulation of the model)."

2) J.Bondorf, R.Donangelo, I.Mishustin, C.Pethick, K.Sneppen: Phys. Lett. 162B (1985) 57. ``Sampling in statistical multifragmentation of nuclei."

3) J.Bondorf, R.Donangelo, H.Schulz, K.Sneppen: Phys.Lett. 162B (1985) 30. ``Energy thresholds for fragmentation and vaporization of the atomic nucleus."

4) K.Sneppen: Nuclear Physics A470 (1987) 213. ``Partitioning of a two component system and the isotope distribution in nuclear fragmentation."

5) H.Barz, J.Bondorf, R.Donangelo, H.Schulz and K.Sneppen: Phys Lett. B191 (1987) 232. ``Isotope distribution in nuclear multifragmentation"

6) A.S.Botvina, A.S.Iljinov, I.N.Mishustin,J.P.Bondorf, R.Donangelo, K.Sneppen: Nucl. Phys. A475 (1987) 663. ``Statistical Simulation of the break up for highly excited Nuclei."

7) K. Sneppen and L. Vinet: Nucl. Phys. A480 (1988) 342. ``Dynamics and clusterization in nuclear collisions".

8) K.Sneppen and L.Vinet: ``Dynamic Instability and Fragmentation in Nuclear Collisions", in "Physics of Intermediate and High energy Heavy Ion reactions", Edds.: M.Kutschera and M.Ploszajzak; World Scientific Publ., P.O.Box 128, Farrer Road, Singapore 9128.

9) J. Randrup, M. Robinson and K. Sneppen: Phys. Lett. B208 (1988) 25. ``Fragment interactions at the nuclear dissasemply".

10) H.W. Barz, H. Schulz, J.P.Bondorf, J.Lopez and K. Sneppen: Phys. Lett. B211 (1988) 25. ``On Isotopic Yield Ratios of Complex Fragments from Heavy Ion Induced Reactions".

11) J.P. Bondorf, R.Donangelo and K. Sneppen: Phys. Lett. B214 (1988) 321. ``Effect of fluctuations on the dynamics of bubble growth in hot nuclear matter".

12) H.W. Barz, H. Schulz, J.P. Bondorf, R. Donangelo and K. Sneppen: Phys. Rev. C39 (1989) 1176. ``Multiplicity Distributions for the Reaction Ar+Al Calculated from Statistical Multifragmentation".

13) K. Sneppen, D. Cussol and C. Gregoire: Phys. Lett. B220 (1989) 342. ``Determination of nuclear properties below normal density from the multifragmentation pattern".

14) K. Sneppen and R. Donangelo: Phys. Rev. C39 (1989) 263. ``Coarse Graining of Microscopic Variables in the Minimal Information Approach".

15) R.Donangelo, K.Sneppen and J.P.Bondorf: Phys. Lett B219 (1989) 165. ``Appearence of Large amplitude Instabilities in an expanding nucleus."

16) J.P. Bondorf and K.Sneppen: Preprint NBI-89-20, Les Houches winter school on nuclear matter (1989). ``Nuclear matter and Fragmenting Nuclei".

17) H.W.Barz, J.P.Bondorf, R.Donangelo, H.Schulz and K.Sneppen: Physics Letters B228 (1989) 453. ``Kinetic and Internal fragment temperatures of a highly excited nucleus".

18) B.Jakobsson, G.Jonsson, L. Karlsson, V.Kopljar, B.Noren, K. Soderstrom, E.Monand, F.Schussler, H.Nifenecker, G.Fai, J.Bondorf and K.Sneppen: Nuclear Physics A509 (1990) 195; ``Observation of transient from fusion to multifragmentation in Oxygen induced reactions".

19) H.W.Barz, J.P.Bondorf, H.Schulz and K.Sneppen: Physics Letters B244 (1990) 161. ``Velocity correlations in the multifragmentation scenario".

20) H. W. Barz, J.P. Bondorf, R. Donangelo, F.S. Hansen, B. Jakobsson, L. Karlsson, H. Nifenecker, H. Schulz, F. Schussler, K. Sneppen, K. Soderstrom. ``Flow effects in intermediate energy nuclear collisions". Nucl. Phys. A531 (1991) 453.

21) H. W. Barz, J.P. Bondorf, R. Donangelo, F.S. Hansen, B. Jakobsson, L. Karlsson, H. Nifenecker, H. Schulz, F. Schussler, K. Sneppen, K. Soderstrom: ``Analysis of central events in intermediate energy heavy ion reactions". Nuclear Physics A531 (1991) 453.

22) H. W. Barz, J.P. Bondorf, R. Donangelo, I.N. Mishustin, H. Schulz, and K. Sneppen: ``Fluctuations and intermittency in multifragmentation processes" Phys. Rev. C45 (1992) R2541.

23) H. W. Barz, J.P. Bondorf, R. Donangelo, I. Mishustin, H. Schulz, and K. Sneppen: ``Gating in Nuclear multifragmentation processes" Nucl. Phys. A545 (1992) 213c.

24) J.P. Bondorf and K. Sneppen: ``Summary and comments" Nucl. Phys. A545 (1992) 567c.

25) H. W. Barz, J.P. Bondorf, C.H.Dasso, R. Donangelo, G. Pollarolo, H. Schulz, and K. Sneppen: ``Mechanism for nuclear disassembly of the $Ar+Th$ and $Pb+Au$ systems at intermediate energies." Phys. Rev. C46 (1992) R42; ibid. Ric.Sci.Edu 91 (1992) 284.

26) W.Bauer, J.P.Bondorf, R.Donangelo, R.Elmer, B.Jakobsson, H.Schulz, F.Schussler and K.Sneppen: ``Large Radial Flow in Nucleus-Nucleus Collisions", Phys. Rev. C47, R1838, 1993.

27) H.W.Barz, W.Bauer, J.P.Bondorf, A.S.Botvina, R.Donangelo, H.Schulz and K.Sneppen: ``Charged-Particle Correlationer in 600 AMeV Gold Induced Disassembly Reactions; A Statistical Multifragmentation Analysis." Nucl. Phys. A561 (1993) 466.

28) J.P. Bondorf, C.H.Dasso, R. Donangelo, G. Pollarolo, H. Schulz and K. Sneppen: ``Deep Inelastic Collisions Followed by Dissasembly In the reaction $^{136}Xe+^{200}Bi$ at $E_{lab}/A=28.2MeV$." Phys. Rev. C48 (1993) 459.

29) S.R. Souza, F. Schussler, R. Donangelo, K.Sneppen, J.P. Bondorf, R. Elmer, B. Jakobsson, S. Leray, C. Ngo and H. Nifenecker, Phys. Rev. C50 (1994) 257.

30) D.H.E.Gross and K.Sneppen ``Statistical Multifragmentation, Comparison of two quite successful Models". Nucl. Phys. A567 (1994) 317-328.

31) R. Donangelo, H. Schulz, K. Sneppen and S. Souza: ``Heath capacity of a Fermi system and fragmentation of the Atomic Nucleus". Phys. Rev. C50 (1994); R563-565.

32) V. Avdeichikov.....et. al, K. Sneppen,..: ``Experimental isotopic effects in comparisons to statistical prescriptions for fragment production in $32$ AMeV and $14$ AMeV $^{14}N+^{112,124}Sn$ reactions", Physica Scripta, Vol. 50, 624.

33) Yu Murin...et. al, K. Sneppen,..: ``Isobaric Ratios Of Fragments Emitted in Complete Fusion Reactions", Lund Preprint, LUIP 9402.

34) F. Schussler, H. Nifenecker, B. Jakobsson, V. Kopljar, K. Soderstrom, S. Leran, C. Ngo, S. Souza, J. Bondorf and K. Sneppen. Nuclear Physics A581 (1995) 704-718.

35) J.P. Bondorf, A.S. Botvina, A.S. Iljinov, I.N. Mishustin and K. Sneppen: ``Statistical Multifragmentation Of Nuclei", Physics Reports 257 (1995) 133-221.

36) T.Hennino, B.Ramstein...et. al. K.Sneppen,..: ``Study of decay and absorption of the $\Delta$ resonance in nuclei with a $4\pi$ detector." Phys. Lett. B283 (1992) 42

37) K. Sneppen and C. Gaarde: ``Cascade simulations of a $\Delta$-isobar propagating in a nucleus." Phys. Rev. C50 (1994) 338-349.

Non Linear Physics:

Chaos, Fronts, and Fractals

38) I. Procaccia, T.Bohr, M.H.Jensen, V.S.L'vov, K.Sneppen and R.Zeitak: ``Surface Roughening and the long wawelength properties of the Kuramoto-Schivashinsky equation."
Phys. Rev. A46, 3220 (1992).

39) K.Sneppen, J.Krug, M.H.Jensen, C. Jayaprakash and T. Bohr: ``Dynamical Scaling and crossover analysis for the Kuramoto-Schivashinsky equation." Phys. Rev. A46, R7351 (1992)

40) K. Sneppen: ``Self organized pinning and interface growth in a random medium."
Phys. Rev. Lett. 69, 3539 (1992).

41) K.Sneppen and M.H.Jensen: ``Reply'', Phys. Rev. Lett. 70 3833 (1993).

42) K.Sneppen and M.H.Jensen: ``Colored Activity in Self Organized Critical Interface dynamics."
Phys. Rev. Lett. 71 101 (1993).

43) K.Sneppen and M.H.Jensen: ``Multidiffusion and Critical dynamics of Strings and Membranes" Phys. Rev. E49 919 (1994).

44) K.Sneppen and M.H.Jensen: ``Critical wrinkling of Depinned Interfaces, Strings and Membranes". Phase Transition and relaxation in systems with Competing energy scales. NATO ASI series vol 415 (1993) 437.

45) J.Falk, M.H.Jensen and K.Sneppen: ``Intermittent dynamics and self organized depinning in propagating fronts". Phys. Rev. E49, 2804 (1994).

46) J.Falk, K.Sneppen and M.H.Jensen: ``Self Organized Critical Dynamics of Fronts: Intermittency and multiscaling" Chaos, Solitons and Fractals. 1994.

47) G. Huber, M.H.Jensen and K. Sneppen, ``Distributions of Self-Intercations and voids in (1+1)-d Directed percolation", Phys. Rev. E52 (1995), R2133-2136

48) G. Huber, M.H.Jensen and K. Sneppen, ``A dimension formula for self similar and self affine fractals" Fractals, 3 (1995) 525.

49) M. Newman and K. Sneppen, ``Avalanches, Scaling and Coherent noise'', Phys. Rev. E54 (1996) 6226.

50) M. Markosova, M.H. Jensen, K.B. Lauritsen and K. Sneppen, ``Onset of Criticality and transport in a driven diffusive system'' Phys. Rev. E53 (1996) R2085.

51) K. Sneppen and M. Newman, ``Coherent noise, Scaling and Intermittency in large systems'', Physica D 110 (1997) 209.

52) H. Nakanishi and K. Sneppen, ``Universal versus Drive Dependent Exponents for Sandpile Models'' Phys. Rev. E. 55 (1997) 4012.

53) M.H. Jensen, K.B. Lauritsen, M. Markosova and K. Sneppen, ``Directed percolation with an absorbing boundary''. Physica A247 (1997) 1

54) V. Priezzev and K. Sneppen ``Multiple scaling in a 1-d sandpile model'' Phys. Rev. E58 (1998) 6959.

Physics of Biological Systems

55) P.Bak and K.Sneppen: "Punctuated Equilibrium and Criticality in a simple model of Evolution". Phys. Rev. Lett. 71 4083 (1993).

56) P.Bak, H.Flyvbjerg and K.Sneppen: "Can we model Darwin", New Scientist 1916 37 (1994, march 12).

57) H.Flyvbjerg, K.Sneppen and P.Bak: "Mean Field Theory for a simple model of Evolution". Phys. Rev. Lett. 71 4087 (1993).

58) K. Sneppen, P.Bak, H.Flyvbjerg, M.H.Jensen ``Evolution as a Self-Organized Critical Phenomenon", Procedings National Academy of Science, 92 (1995), 5209-5213.

59) H. Flyvbjerg, P.Bak, M.H.Jensen and K. Sneppen, ``Self-Organized Criticality in evolution", Biological Physics (1994), edd. O. Mouritzen.

60) D. Fygenson, H. Flyvbjerg, K. Sneppen, S. Leibler and A. Libchaber, ``Bulk nucleation of microtubules". Phys. Rev. E51 (1995) 5058-5063

61) K. Sneppen, ``Extremal dynamics and punctuated co-evolution'', Physica A221 (1995) 168-179.

62) M.E.J. Newman, S.M. Frazer, K. Sneppen and W.M. Tozier, ``Comment on ``Self organized criticality in living systems", by C. Adami", Physics Letters A228 (1997) 202-204.

63) T. Sams, K. Sneppen, M.H. Jensen, C. Ellegård, B.E. Christensen and U. Trane, ``Morphological Instabilities in a growing Yeast Colony'' Phys. Rev. Lett. 79 (1997) 313.

64) A. Hansen, M.H. Jensen, K. Sneppen and G. Zocchi, ``Hierarchical modeling of Cooperativity and Mirror effect in Proteins''. Physica A 250 (1998) 355.

65) A. Hansen, M.H. Jensen, K. Sneppen and G. Zocchi, ``Statistical mechanics of the folding transitions in globular proteins.'', Eur. Phys. J B 6 (1998) 157-161.

66) S. Bornholdt and K.Sneppen, ``Punctuated equilibrium in neutral evolution of genetic networks''. Phys. Rev. Lett. 81 (1998) 236.

67) K. Christensen, R. Donangelo, B. Koiler and K. Sneppen, ``Evolution of random networks'' Phys. Rev. Lett. 87 (1998) 2380-2383.

68) A. Hansen, M.H. Jensen, K. Sneppen and G. Zocchi, ``A model for the thermodynamics of globular proteins'' Physica A270 (1999) 278-287.

69) A. Hansen, M.H. Jensen, K. Sneppen and G. Zocchi, ``Modelling Molecular Motors as Folding- Unfolding Cycles'' Europhysics Letters 50 120.

70) R. Donangelo and K. Sneppen, "Self organization of value and demand", Physica A 276 (2000) 572. (cond-mat/9906298)

71) A. Hansen, M. H. Jensen, K. Sneppen and G. Zocchi, ``Proteins Top-Down: A Statistical Mechanics Approach," Physica A, 288, 21 (2000).

72) K.B. Arnvig, S. Pedersen and K. Sneppen "Thermodynamics of Heat Shock Response". Phys. Rev. Lett. 84 (2000) 3005-3008. (cond-mat/9912402)

73) O. Skjæveland & K. Sneppen, ``Characterization of Heteropolymer Collaps''. Europhysical Journal. E2 (2000) 285-288.

74) R. Donangelo, A. Hansen, K. Sneppen & S. Souza, ``Modelling an inperfect market", Physica A 283 (2000) 469-478.

75) R. Donangelo, A. Hansen, K. Sneppen & S. Souza, ``Physics of Fashion Fluctuations", Physica A, 287, 539 (2000).

76) S. Bornholdt & K.Sneppen, ``Robustness as an evolutionary principle'', Proc Roy. Soc. London, B (2000) 267 2281-2286

77) A. Bak, J.S. Hoye, A. Hansen, K. Sneppen & M.H. Jensen ``Pathways in Two-State Protein Folding'', To appear in Biophysical Journal. (cond-mat/9912483)

78) J. Borg, M.H.Jensen, K. Sneppen & G. Tiana, ``Hydrogen Bonds in Polymer Folding'', (cond-mat/0003307) Phys. Rev. Letters 86 2001, p1031-1033.

79) Audun Bakk, Johan S. Hoye, Alex Hansen and Kim Sneppen ``Thermodynamical implications of a protein model with water interactions'' J. Theor. Biol. 210, 367 (2001).

80 A. Bakk, P. Dommersnes, A. Hansen, J. S. Hoye, K. Sneppen and M. H. Jensen, ``Thermodynamics of Proteins: Fast Folders and Sharp Transitions," to appear in Computers in Physics.

81) A. Bakk, A. Hansen and K. Sneppen, ``A protein model exhibiting three folding transitions'', Physics A 291, 60 (2001).

82) R. Donangelo, K. Sneppen and S.R. Souza, A computer program for statistical multifragmentation of nuclei, Comput. Phys. Commun. 140 (3): 405-411, (2001).

83) E. Aurell and K. Sneppen, Epigenetics as a first exit problem, Phys. Rev. Lett. 88, 048101-1 (2002).

84) S. Maslov and K. Sneppen, Specificity and stability in topology of protein networks, Science 296 910-913, (2002).

85) S. Maslov and K. Sneppen, Protein interaction networks beyond artifacts FEBS 530 255-256 (2002).

86) E. Aurell, S. Brown, J. Johansen, K. Sneppen, ``Stability puzzles in $\lambda$ phage", Physical Review E 65, 051914 (2002). Virtual Journal of Biological Physics Research-May 15, 2002, Volume 3, Issue 10.

87) I. Simonsen and K. Sneppen, ``Profit profiles in correlated markets" Physica A 316 561-567 (2002).

88) R. Donangelo and K. Sneppen, ``Cooperativity in a trading model with memory and production" Physica A 316 581-591 (2002).

89) G. Tiana, M.H. Jensen and K. Sneppen. Time delay as a key to apoptosis induction in the p53 network. European Phys. Journal B. 29 135 (2002).

90) K. Eriksen, I. Simonsen, S. Maslov and K. Sneppen, Modularity and extreme edges of the internet, Phys. Rev. Lett. 90, 148701 (2003)

91) M.H. Jensen, G. Tiana and K. Sneppen, Sustained oscillations and time delays in gene expression of protein Hes1 . Febs letters 541, Issue 1-3, pp. 176-177 (2003).

92) T. Hwa, E. Marinari, K. Sneppen, Lei-han Tang Localization of Denaturation Bubbles in Random DNA Sequences Proceedings National Academy of Science 100: 4411-4416 (2003).

93) M. Rosvall and K. Sneppen, ``Modelling Dynamics of Information Networks", Phys. Rev. Lett. 91, 178701 (2003).

94) K.T. Bæk, S. Svenningsen, H. Eisen, K. Sneppen & S. Brown, ``Single-cell analysis of lambda immunity regulation", J. Mol. Biol. 334 363-372 (2003).

95) D.K. Fygenson, D.J. Needleman & K. Sneppen, ``Variability alignment identifies functional regions in tubulin paralogs." Protein Science 13 25-31 (2004).

96) S. Maslov, K. Sneppen & A. Zaliznyak Pattern Detection in Complex Networks: Correlation Profile of the Internet. Physica A: 333, 15 February 2004, Pages 529-540

97) R. Korsnes, S. R. Souza, R. Donangelo, A. Hansen, M. Paczuski and K. Sneppen Scaling in fracture and refreezing of sea ice Physica A: 331, Issues 1-2, 1 January 2004, Pages 291-296

98) I. Simonsen , K.A. Eriksen , S. Maslov and K. Sneppen Diffusion on complex networks: a way to probe their large-scale topological structures, Physica A: 336, Issues 1-2, 1 May 2004, Pages 163-173

99) P. Minnhagen, M. Rosvall, K. Sneppen & A. Trusina. Self-organization of structures and networks from merging and small-scale fluctuations. Physica A 340, Issue 4, 15 September 2004, Pages 725-732

99) A. Trusina, S. Maslov, P. Minnhagen & K. Sneppen, Hierarchy and Anti-Hierarchy in Real and Scale Free networks Pysical Review Lett. 92, 178702 (2004).

100) S. Maslov, K. Sneppen and K. A. Eriksen, Upstream Plasticity and Downstream Robustness in Evolution of Molecular Networks. BMC Evolutionary Biology 2004, 4:9.

101) Kasper Astrup Eriksen, Michael Hörnquist and Kim Sneppen Visualization of large-scale correlations in gene expressions Functional & Integrative Genomics 2004, 4, Nr 4, 241 - 245

102) K. Sneppen, M. Rosvall, A. Trusina, P. Minnhagen. A simple model for self organization of bipartite networks. Europhys. Lett. 67 (2004) 349

103) R. Donangelo, A. Hansen, K. Sneppen and S.R. Souza Need, Greed and Noise: Competing strategies in a trading model Physica A: Statistical and Theoretical Physics, Volume 348, 15 March 2005, Pages 496-504

104) Jacob Bock Axelsen & Kim Sneppen. A Network Model of Translation Control in the Unfolded Protein Response Module. Phys. Biol. 1 (2004) p. 159

105) Beom Jun Kim, Petter Minnhagen, Ala Trusina & Kim Sneppen. Scale Free networks from Aggregation and Creation of Vertices. European Physical Journal B - Condensed Matter, 43(2005), 369 - 372

106) Kim Sneppen, Ala Trusina, Martin Rosvall. Hide and seek on complex networks. Europhys. Lett. 69 (2005) p. 853

107) Martin Rosvall, Ala Trusina, Petter Minnhagen and Kim Sneppen Networks and Cities: An Information Perspective Phys. Rev. Lett 94 (2005) p. 28701

108) K. Sneppen, I.B. Dodd, K.E.Shearwin, A. Palmar, R.A. Schubert, B. Callen and J.B. Egan. A methamatical model for transcriptional interference by RNA polymerase traffic in Escherichia coli. J. Mol. Biol. 346 (2005) p. 399

109) A. Trusina, M. Rosvall, K. Sneppen Communication Boundaries in Networks Phys. Rev. Lett. 94 (2004) p. 238701

110) K. Sneppen, A. Trusina and M. Rosvall Measuring information Networks Pramana 64 (2005) 1121-1125.

111) Sergei Maslov and Kim Sneppen (2005). Computational architecture of the yeast regulatory network. Phys. Biol. 2) S94-S100.

112) M. Rosvall, A. Gronlund, P. Minnhagen, K. Sneppen. Searchability of Networks. Phys. Rev. E 72, 046117 (2005). cond-mat/0505400

113) Ala Trusina, Kim Sneppen, I.B. Dodd, K.E. Shearwin and J.B. Egan. Functional alignment of regulatory networks: A study of temperate phages (2005). q-bio.MN/0511047. To appear in Plos Computation.

114) A. Gronlund, K. Sneppen and P. Minnhagen. Correlations in Networks associated to Preferential Growth (2004). cond-mat/0401537.

115) Sandeep Krishna, Mogens H. Jensen, Kim Sneppen Spiky oscillations in NF-kB signalling (2005) q-bio.MN/0509017

116) Jacob Bock Axelsen, Sebastian Bernhardsson, Martin Rosvall, Kim Sneppen, Ala Trusina. Degree Landscapes in Scale-Free Networks (2005). physics/0512075

117) M. Rosvall, K. Sneppen. Modeling self-organization of communication and topology in social networks (2005). physics/0512105.

Book:

K.Sneppen and G. Zocchi, ``Physics in molecular biology'' Cambridge University Press (2005).



Kim Sneppen 2005-12-21